Cookbook

From Bio.scipy.org

Contents 1 Input 2 Output 3 Filter

Input

• ReadFasta - Iterate through the sequences from a file in FASTA format. This can be used as a shell for many basic tasks.

Output

• ExcelWriter - Excel-compatible XML files as an alternative to CSV files

Filter

• RenameFastaSequences - Rename a file of sequences in FASTA format, for example to input into some phylogeny programs that only allow 10 character names.